DuDe Computational Boot Camp
latest

Contents:

  • Quality Control
  • Assembly
  • Mapping
  • Binning (with CONCOCT and ANVIO)
  • A Full Metagenomics Run
  • Shared Resources
  • Resources for Working on Greatlakes
  • Basic Singularity usage
DuDe Computational Boot Camp
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  • Resources for Working on Greatlakes
  • Edit on GitHub

Resources for Working on Greatlakes

  1. bash Resources - https://swcarpentry.github.io/shell-novice/ - https://devhints.io/bash - https://linuxconfig.org/bash-scripting-tutorial-for-beginners

  2. Setup the vpn - https://its.umich.edu/enterprise/wifi-networks/vpn/getting-started

  3. greatlakes getting getting-started - https://arc.umich.edu/greatlakes/user-guide/

  4. slurm user user-guide - https://arc.umich.edu/greatlakes/slurm-user-guide/

  5. globus tutorial - https://arc.umich.edu/globus/

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© Copyright 2018, Jacob Evans. Revision 5de50d3a.

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